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1

Applications of Immunopharmacogenomics: Predicting, Preventing, and Understanding Immune-Mediated Adverse Drug Reactions

Karnes, Jason H., Miller, Matthew A., White, Katie D., Konvinse, Katherine C., Pavlos, Rebecca K., Redwood, Alec J., Peter, Jonathan G., Lehloenya, Rannakoe, Mallal, Simon A., Phillips, Elizabeth J.

Journal:

Annual Review of Pharmacology

Year:

2019

Language:

english

File:

PDF, 2.52 MB

english, 2019

2

Artificial intelligence using convolutional neural networks for real-time detection of early esophageal neoplasia in Barrett’s esophagus (with video)

Hashimoto, Rintaro, Requa, James, Tyler, Dao, Ninh, Andrew, Tran, Elise, Mai, Daniel, Lugo, Michael, El-Hage Chehade, Nabil, Chang, Kenneth J., Karnes, Williams E., Samarasena, Jason

Journal:

Gastrointestinal Endoscopy

Year:

2020

File:

PDF, 15.68 MB

2020

3

Nanotechnology for sustainable food production: promising opportunities and scientific challenges

Rodrigues, Sónia M., Demokritou, Philip, Dokoozlian, Nick, Hendren, Christine Ogilvie, Karn, Barbara, Mauter, Meagan S., Sadik, Omowunmi A., Safarpour, Maximilian, Unrine, Jason M., Viers, Josh, Welle

Journal:

Environmental Science: Nano

Year:

2017

Language:

english

File:

PDF, 1.29 MB

english, 2017

4

Applications of Immunopharmacogenomics: Predicting, Preventing, and Understanding Immune-Mediated Adverse Drug Reactions

Karnes, Jason H., Miller, Matthew A., White, Katie D., Konvinse, Katherine C., Pavlos, Rebecca K., Redwood, Alec J., Peter, Jonathan G., Lehloenya, Rannakoe, Mallal, Simon A., Phillips, Elizabeth J.

Journal:

Annual Review of Pharmacology

Year:

2019

File:

PDF, 2.52 MB

2019

5

Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

Karn, Avinash, Heim, Crystal, Flint-Garcia, Sherry, Bilyeu, Kristin, Gillman, Jason

Journal:

Journal of the American Oil Chemists' Society

Year:

2017

Language:

english

File:

PDF, 894 KB

english, 2017

6

Single Day Low Residue Diet Prior to Colonoscopy Shows Improved Bowel Preparation Quality and Patient Tolerance Over Clear Liquid Diet: Final Results From a Randomized, Single-Blinded, Dual Center Study

Samarasena, Jason, El Hage Chehade, Nabil, Yu, Allen, Tran, Elise, Mai, Daniel, Thieu, Daniel, Parekh, Nimisha K., Karnes, William, Chang, Kenneth J., Jamal, Mazen

Journal:

American Journal of Gastroenterology

Year:

2019

Language:

english

File:

PDF, 131 KB

english, 2019

7

Factors Influencing Blood Pressure Response to Trandolapril Add-On Therapy in Patients Taking Verapamil SR (from the International Verapamil SR/Trandolapril [INVEST] Study)

Martin Brunner, Rhonda M. Cooper-DeHoff, Yan Gong, Jason H. Karnes, Taimour Y. Langaee, Carl J. Pepine, Julie A. Johnson

Journal:

The American Journal of Cardiology

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

8

Artificial Intelligence Can Accurately Detect Tools Used During Colonoscopy: Another Step Forward Toward Autonomous Report Writing: Presidential Poster Award

Samarasena, Jason, Yu, Allen R., Torralba, Ericson John, Mai, Daniel, Lee, David P., Moosvi, Zain, Chang, Vincent Chao, Dao, Tyler, Requa, James, Ninh, Andrew, Karnes, William

Journal:

American Journal of Gastroenterology

Year:

2018

File:

PDF, 2.13 MB

2018

9

Innovation in Clinical Pharmacy Practice and Opportunities for Academic-Practice Partnership

American College of Clinical Pharma, , Gubbins, Paul O., Micek, Scott T., Badowski, Melissa, Cheng, Judy, Gallagher, Jason, Johnson, Samuel G., Karnes, Jason H., Lyons, Kayley, Moore, Katherine G., S

Journal:

Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy

Year:

2014

Language:

english

File:

PDF, 121 KB

english, 2014

10

Genetic Admixture and Survival in Diverse Populations with Pulmonary Arterial Hypertension

Karnes, Jason H., Wiener, Howard W, Schwantes-An, Tae-Hwi, Natarajan, Balaji, Sweatt, Andrew J, Chaturvedi, Abhishek, Arora, Amit, Batai, Ken, Nair, Vineet, Steiner, Heidi E., Giles, Jason B., Yu, Jef

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2020

File:

PDF, 1.91 MB

2020

11

Lack of association of theHMGA1IVS5-13insC variant with type 2 diabetes in an ethnically diverse hypertensive case control cohort

Jason H Karnes, Taimour Y Langaee, Caitrin W McDonough, Shin-Wen Chang, Miguel Ramos, James R Catlin Jr, Octavio E Casanova, Yan Gong, Carl J Pepine, Julie A Johnson, Rhonda M Cooper-DeHoff

Journal:

Journal of Translational Medicine

Year:

2013

Language:

english

File:

PDF, 240 KB

english, 2013

12

Exome Sequencing Implicates an Increased Burden of Rare Potassium Channel Variants in the Risk of Drug-Induced Long QT Interval Syndrome

Weeke, Peter, Mosley, Jonathan D., Hanna, David, Delaney, Jessica T., Shaffer, Christian, Wells, Quinn S., Van Driest, Sara, Karnes, Jason H., Ingram, Christie, Guo, Yan, Shyr, Yu, Norris, Kris, Kanna

Journal:

Journal of the American College of Cardiology

Year:

2014

Language:

english

File:

PDF, 246 KB

english, 2014

13

Prevalence of Salmonella enterica, Listeria monocytogenes, and Escherichia coli Virulence Factors in Bulk Tank Milk and In-Line Filters from U.S. Dairies

Van Kessel, Jo Ann S., Karns, Jeffrey S., Lombard, Jason E., Kopral, Christine A.

Journal:

Journal of Food Protection

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

14

Using systems approaches to address challenges for clinical implementation of pharmacogenomics

Karnes, Jason H., Van Driest, Sara, Bowton, Erica A., Weeke, Peter E., Mosley, Jonathan D., Peterson, Josh F., Denny, Joshua C., Roden, Dan M.

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2015

File:

PDF, 438 KB

2015

15

MP69-08 AN ANALYSIS OF THE MORBIDITY OF LIMITED, EXTENDED, AND SUPER-EXTENDED PELVIC LYMPHADENECTOMY TEMPLATES DURING RADICAL PROSTATECTOMY

Sharma, Vidit, Morlacco, Alessandro, Joseph, Jason E, Nehra, Avinash K, Tollefson, Matthew K, Thompson, R. Houston, Boorjian, Stephen A, Frank, Igor, Gettman, Matthew T, Karnes, R. Jeffrey

Journal:

The Journal of Urology

Year:

2016

Language:

english

File:

PDF, 164 KB

english, 2016

16

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants

Karnes, Jason H., Bastarache, Lisa, Shaffer, Christian M., Gaudieri, Silvana, Xu, Yaomin, Glazer, Andrew M., Mosley, Jonathan D., Zhao, Shilin, Raychaudhuri, Soumya, Mallal, Simon, Ye, Zhan, Mayer, Jo

Journal:

Science Translational Medicine

Year:

2017

Language:

english

File:

PDF, 1.90 MB

english, 2017

17

Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

Karn, Avinash, Gillman, Jason D., Flint-Garcia, Sherry A.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 482 KB

english, 2017

18

Comparison of HLA allelic imputation programs

Karnes, Jason H., Shaffer, Christian M., Bastarache, Lisa, Gaudieri, Silvana, Glazer, Andrew M., Steiner, Heidi E., Mosley, Jonathan D., Mallal, Simon, Denny, Joshua C., Phillips, Elizabeth J., Roden,

Journal:

Year:

2017

Language:

english

File:

PDF, 892 KB

english, 2017

19

A genome-wide association study of heparin-induced thrombocyto - penia using an electronic medical record

Karnes, Jason H., Cronin, Robert M., Rollin, Jerome, Teumer, Alexander, Pouplard, Claire, Shaffer, Christian M., Blanquicett, Carmelo, Bowton, Erica A., Cowan, James D., Mosley, Jonathan D., Van Dries

Journal:

Thrombosis and Haemostasis

Year:

2015

Language:

english

File:

PDF, 592 KB

english, 2015

20

Pharmacological Abrogation of S-Phase Checkpoint Enhances the Anti-Tumor Activity of Gemcitabine In Vivo

Matthews, David J., Yakes, Michael, Chen, Jason, Tadano, Michele, Bornheim, Lester, Clary, Douglas O., Tai, Albert, Wagner, Jill M., Miller, Nicole, Kim, Yong D., Robertson, Scott, Murray, Louis, Karn

Journal:

Year:

2007

Language:

english

File:

PDF, 1.00 MB

english, 2007

21

Automated Documentation of Multiple Colonoscopy Quality Measures in Real-Time with Convolutional Neural Networks

Karnes, William, Requa, James, Dao, Tyler, Massoud, Rayan, Samarasena, Jason, Ninh, Andrew

Journal:

American Journal of Gastroenterology

Year:

2018

File:

PDF, 923 KB

2018

22

Alteration in fasting glucose after prolonged treatment with a thiazide diuretic

Karnes, Jason H., Gong, Yan, Arwood, Meghan J., Gums, John G., Hall, Karen L., Limacher, Marian C., Johnson, Julie A., Cooper-DeHoff, Rhonda M.

Journal:

Diabetes Research and Clinical Practice

Year:

2014

Language:

english

File:

PDF, 716 KB

english, 2014

23

Using systems approaches to address challenges for clinical implementation of pharmacogenomics

Karnes, Jason H., Van Driest, Sara, Bowton, Erica A., Weeke, Peter E., Mosley, Jonathan D., Peterson, Josh F., Denny, Joshua C., Roden, Dan M.

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2014

Language:

english

File:

PDF, 235 KB

english, 2014

24

PROX1 Gene Variant is Associated with Fasting Glucose Change After Antihypertensive Treatment

Gong, Yan, McDonough, Caitrin W., Beitelshees, Amber L., Karnes, Jason H., O'Connell, Jeffrey R., Turner, Stephen T., Chapman, Arlene B., Gums, John G., Bailey, Kent R., Boerwinkle, Eric, Johnson, Jul

Journal:

Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy

Year:

2014

Language:

english

File:

PDF, 153 KB

english, 2014

25

Warfarin Pharmacogenomics in Diverse Populations

Kaye, Justin B, Schultz, Lauren E, Steiner, Heidi E, Kittles, Rick A, Cavallari, Larisa H, Karnes, Jason H

Journal:

Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy

Year:

2017

Language:

english

File:

PDF, 631 KB

english, 2017

26

Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves “Resect and Discard” Thresholds

Zachariah, Robin, Samarasena, Jason, Luba, Daniel, Duh, Erica, Dao, Tyler, Requa, James, Ninh, Andrew, Karnes, William

Journal:

American Journal of Gastroenterology

Year:

2019

File:

PDF, 262 KB

2019

27

Fun Fitness Relays

Strand, Brad, Karn, Jason, Horejsi, Roman

Journal:

Year:

2000

Language:

english

File:

PDF, 3.62 MB

english, 2000

28

Clinical and Genetic Factors Associated With Cutaneous Squamous Cell Carcinoma in Kidney and Heart Transplant Recipients

Sanders, M. Lee, Karnes, Jason H., Denny, Josh C., Roden, Dan M., Ikizler, T. Alp, Birdwell, Kelly A.

Journal:

Transplantation Direct

Year:

2015

Language:

english

File:

PDF, 369 KB

english, 2015

29

Su1608 Increased Detection of Precancerous Colorectal Polyps in Young Obese Males

Grewal, Jasleen K., Kulwin, Jacqueline, Ziogas, Argyrios, Zell, Jason, Karnes, William E.

Journal:

Gastrointestinal Endoscopy

Year:

2016

Language:

english

File:

PDF, 326 KB

english, 2016

30

Identifying genetically driven clinical phenotypes using linear mixed models

Mosley, Jonathan D., Witte, John S., Larkin, Emma K., Bastarache, Lisa, Shaffer, Christian M., Karnes, Jason H., Stein, C. Michael, Phillips, Elizabeth, Hebbring, Scott J., Brilliant, Murray H., Mayer

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 572 KB

english, 2016

31

Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic Escherichia coli in bulk tank milk and milk filters from US dairy operations in the National Animal Health Monitoring System Dairy 2014 study

Sonnier, Jakeitha L., Karns, Jeffrey S., Lombard, Jason E., Kopral, Christine A., Haley, Bradd J., Kim, Seon-Woo, Van Kessel, Jo Ann S.

Journal:

Journal of Dairy Science

Year:

2017

Language:

english

File:

PDF, 373 KB

english, 2017

32

723 Single Day Low Residue Diet Prior to Colonoscopy Shows Improved Tolerance and Bowel Preparation Quality Over Clear Liquid Diet: Interim Results From a U.S. Multicenter Randomized Controlled Trial

Samarasena, Jason B., Reataza, Marielle, Kwak, Nathan, Steichen, Joshua, Albers, Gregory, Parekh, Nimisha K., Karnes, William E., Nguyen, Douglas L., Lee, Robert H., Jamal, M. Mazen

Journal:

Gastrointestinal Endoscopy

Year:

2016

Language:

english

File:

PDF, 63 KB

english, 2016

33

Prevalence, antimicrobial resistance, and molecular characterization of Campylobacter spp. in bulk tank milk and milk filters from US dairies

Del Collo, Laura P., Karns, Jeffrey S., Biswas, Debabrata, Lombard, Jason E., Haley, Bradd J., Kristensen, R. Camilla, Kopral, Christine A., Fossler, Charles P., Van Kessel, Jo Ann S.

Journal:

Journal of Dairy Science

Year:

2017

Language:

english

File:

PDF, 674 KB

english, 2017

34

Improved Tolerance and Satisfaction With Low-Residue Diet Compared to Clear Liquid Diet for Colon Cleansing Prior to Colonoscopy: Interim Results From a Multicenter Randomized Trial

Samarasena, Jason B., Steichen, Joshua, Kwak, Nathan, Albers, Gregory C., Parekh, Nimisha, Nguyen, Douglas, Karnes, Williams, Lee, Robert, Jamal, Mazen M.

Journal:

American Journal of Gastroenterology

Year:

2015

File:

PDF, 309 KB

2015

35

Oral IBGardâ¢ Before Colonoscopy: A Single-Center Double-Blinded, Randomized, Placebo-Controlled Trial

Han, James Y., Moosvi, Zain, Duh, Erica, Park, Sunhee, Albers, Gregory C., Samarasena, Jason B., Karnes, William

Journal:

Digestive Diseases and Sciences

Year:

2020

File:

PDF, 735 KB

2020

36

Su1789 Effect of Delay in Surgical Treatment of Colon Cancer on Survival

Jalali, Farid, Ziogas, Argyrios, Zell, Jason A., Stamos, Michael J., Anton-Culver, Hoda, Karnes, William E.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 571 KB

english, 2014

37

Su1598 Single Day Low Residue Diet Prior to Colonoscopy Shows Improved Tolerance and Equivalent Bowel Preparation Quality Over Clear Liquid Diet: A U.S. Multicenter Randomized Controlled Trial

Samarasena, Jason B., Yu, Allen R., Thieu, Daniel, Paiji, Christopher, Bucayu, Robert F., Steichen, Joshua, Parekh, Nimisha K., Karnes, William E., Nguyen, Douglas L., Lee, Robert H., Chang, Kenneth J

Journal:

Gastrointestinal Endoscopy

Year:

2017

Language:

english

File:

PDF, 281 KB

english, 2017

38

Single nucleotide polymorphisms in the MYLKP1 pseudogene are associated with increased colon cancer risk in African Americans

Lynn, Heather, Sun, Xiaoguang, Ayshiev, Djanybek, Siegler, Jessica H., Rizzo, Alicia N., Karnes, Jason H., Gonzales Garay, Manuel, Wang, Ting, Casanova, Nancy, Camp, Sara M., Ellis, Nathan A., Garcia,

Journal:

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

39

CCR5 receptor antagonism inhibits hepatitis C virus (HCV) replication in vitro

Blackard, Jason T., Kong, Ling, Rouster, Susan D., Karns, Rebekah, Horn, Paul S., Kottilil, Shyam, Shata, M. Tarek, Sherman, Kenneth E., Ray, Ratna B.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.33 MB

english, 2019

40

Sa1940 UNAMBIGUOUS REAL-TIME SCORING OF BOWEL PREPARATION USING ARTIFICIAL INTELLIGENCE

Karnes, William E., Ninh, Andrew, Dao, Tyler, Requa, James, Samarasena, Jason B.

Journal:

Gastrointestinal Endoscopy

Year:

2018

Language:

english

File:

PDF, 122 KB

english, 2018

41

Psychological and Genetic Predictors of Pain Tolerance

Patanwala, Asad E., Norwood, Charles, Steiner, Heidi, Morrison, Daniel, Li, May, Walsh, Keith, Martinez, Marina, Baker, Sarah E., Snyder, Eric M., Karnes, Jason H

Journal:

Clinical and Translational Science

Year:

2018

Language:

english

File:

PDF, 319 KB

english, 2018

42

Pharmacogenetics to prevent heparin-induced thrombocytopenia: what do we know?

Karnes, Jason H

Journal:

Pharmacogenomics

Year:

2018

Language:

english

File:

PDF, 907 KB

english, 2018

43

Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves “Resect and Discard” Thresholds

Zachariah, Robin, Samarasena, Jason, Luba, Daniel, Duh, Erica, Dao, Tyler, Requa, James, Ninh, Andrew, Karnes, William

Journal:

American Journal of Gastroenterology

Year:

2019

Language:

english

File:

PDF, 262 KB

english, 2019

44

HSD3B1 and resistance to androgen-deprivation therapy in prostate cancer: a retrospective, multicohort study

Hearn, Jason W D, AbuAli, Ghada, Reichard, Chad A, Reddy, Chandana A, Magi-Galluzzi, Cristina, Chang, Kai-Hsiung, Carlson, Rachel, Rangel, Laureano, Reagan, Kevin, Davis, Brian J, Karnes, R Jeffrey, K

Journal:

The Lancet Oncology

Year:

2016

Language:

english

File:

PDF, 402 KB

english, 2016

45

Evolution of Next Generation Therapeutics: Past, Present, and Future of Precision Medicines

Ramamoorthy, Anuradha, Karnes, Jason H., Finkel, Richard, Blanchard, Rebecca, Pacanowski, Michael

Journal:

Clinical and Translational Science

Year:

2019

Language:

english

File:

PDF, 147 KB

english, 2019

46

Tu2007 VIDEO VALIDATION OF A NOVEL MULTICLASS CONVOLUTIONL NEURAL NETWORK FOR REAL TIME OPTICAL PATHOLOGY OF ADENOMAS, SESSILE SERRATED POLYPS AND HYPERPLASTIC POLYPS

Zachariah, Robin, Ninh, Andrew, Dao, Tyler, Requa, James, Samarasena, Jason B., Karnes, William E.

Journal:

Gastrointestinal Endoscopy

Year:

2019

File:

PDF, 193 KB

2019

47

Tu1932 AUTOMATED INSERTION TIME, CECAL INTUBATION, AND WITHDRAWAL TIME DURING LIVE COLONOSCOPY USING CONVOLUTIONAL NEURAL NETWORKS - A VIDEO VALIDATION STUDY

Rombaoa, Christopher, Kalra, Ankush, Dao, Tyler, Requa, James, Ninh, Andrew, Samarasena, Jason B., Karnes, William E.

Journal:

Gastrointestinal Endoscopy

Year:

2019

Language:

english

File:

PDF, 332 KB

english, 2019

48

Impact of TCF7L2 single nucleotide polymorphisms on hydrochlorothiazide-induced diabetes

Karnes, Jason H., Gong, Yan, Pacanowski, Michael A., McDonough, Caitrin W., Arwood, Meghan J., Langaee, Taimour Y., Pepine, Carl J., Johnson, Julie A., Cooper-DeHoff, Rhonda M.

Journal:

Pharmacogenetics and Genomics

Year:

2013

Language:

english

File:

PDF, 554 KB

english, 2013

49

A Study of Immunogenetic Associations with Peanut Allergy Utilizing a Novel DNA Repository

Hemler, Jonathan A., Marston, Elizabeth S., Karnes, Jason H., Glazer, Andrew M., Phillips, Elizabeth J., Mallal, Simon A., Kendall, Peggy L.

Journal:

Journal of Allergy and Clinical Immunology

Year:

2016

Language:

english

File:

PDF, 124 KB

english, 2016

50

Reply to: Challenging the Role of Genetic Ancestry in Explaining Racial/Ethnic Health Disparities

Karnes, Jason H., Schwantes-An, Tae-Hwi, Kittles, Rick, Desai, Ankit A.

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2020

File:

PDF, 74 KB

2020

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